Package index

Model function

Run the DAEDALUS integrated economic-epidemiological model

daedalus(): DAEDALUS model for health, social and economic costs of a pandemic

Class `<daedalus_country>`

Represent and access country or territory characteristics

daedalus_country() is_daedalus_country() print(<daedalus_country>): Represent countries and territories for DAEDALUS

Class `<daedalus_infection>`

Represent and access infection characteristics

daedalus_infection() is_daedalus_infection() print(<daedalus_infection>): Represent countries and territories for DAEDALUS

Class `<daedalus_output>`

Class to store model output for further processing

as_daedalus_output() validate_daedalus_output() is_daedalus_output() print(<daedalus_output>): Convert a list to <daedalus_output>

Model output post-processing

Functions to process model output to calculate pandemic costs and other characteristics

get_costs(): Get epidemic costs from a DAEDALUS model run

Package generics

Generics with methods for package S3 classes

get_data(): Get parameters from DAEDALUS classes

set_data(): Set parameters in DAEDALUS classes

Package data

Data included with the package

closure_data: Pandemic response strategy data for DAEDALUS

country_data: Country demographic data for DAEDALUS

infection_data infection_parameter_names epidemic_names: Infection characteristics for model epidemics

economic_contacts: Economic sector contacts data for DAEDALUS

country_names: Country names for DAEDALUS

life_value: Values of statistical lives lost

Model constants

Useful constant used internally

N_AGE_GROUPS N_VACCINE_STRATA AGE_GROUPS i_WORKING_AGE N_ECON_SECTORS i_EDUCATION_SECTOR N_ECON_STRATA i_NOT_WORKING DIM_AGE_GROUPS DIM_EPI_COMPARTMENTS DIM_ECON_SECTORS N_OUTPUT_COLS: DAEDALUS model constants

COMPARTMENTS i_S i_E i_Is i_Ia i_H i_R i_D N_EPI_COMPARTMENTS: Epidemiological compartments and indices

Internal functions

Functions used internally

daedalus-package: daedalus: Model health, social, and economic costs of a pandemic using _DAEDALUS_

daedalus_rhs(): DAEDALUS system of ODEs

get_closure_info(): Get closure time limits and calculate duration

get_hospitalisations(): Calculate total hospitalisations

make_initial_state(): Generate a default initial state for DAEDALUS

make_response_threshold_event(): Event and root-finding functions to trigger response strategies

make_rt_end_event(): Event and root-finding functions to terminate epidemic responses

prepare_mutable_parameters(): Prepare mutable parameters for the DAEDALUS model

prepare_output(): Prepare DAEDALUS data

prepare_parameters(): Prepare country parameters for model

r_eff(): Calculate the effective R