Names and indices for the epidemiological compartments used in
DAEDALUS, for reuse in model code. The duplication is for ease of extracting
indices from a named list, and of extracting names without having to call
names()
.
Usage
COMPARTMENTS
idx_COMPARTMENTS
N_EPI_COMPARTMENTS
i_EPI_COMPARTMENTS
N_MODEL_COMPARTMENTS
N_INFECTION_SUBSYSTEM
Format
An object of class character
of length 9.
An object of class list
of length 9.
An object of class integer
of length 1.
An object of class integer
of length 7.
An object of class integer
of length 1.
An object of class integer
of length 1.
Value
COMPARTMENTS
returns a character vector of the epidemiological
compartment names. idx_COMPARTMENTS
returns a list with the compartment
index.
All other constants return integer values.
Details
DAEDALUS has 7 epidemiological compartments: susceptible, exposed, infectious and symptomatic ("infect_symp"), infectious and asymptomatic ("infect_asymp") , hospitalised, recovered, and dead.
There are 2 additional compartments that track the number of new infections and new hospitalisations.