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Epidemiological compartments and indices

Source: R/constants.R
epi_constants.Rd

Names and indices for the epidemiological compartments used in DAEDALUS, for reuse in model code.

Usage

COMPARTMENTS

N_MODEL_COMPARTMENTS

N_EPI_COMPARTMENTS

N_DATA_COMPARTMENTS

i_EPI_COMPARTMENTS

i_DATA_COMPARTMENTS

i_S

i_E

i_Is

i_Ia

i_H

i_R

i_D

i_dE

i_dH

i_dD

N_INFECTION_SUBSYSTEM

Format

An object of class character of length 9.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 7.

An object of class integer of length 2.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

An object of class integer of length 1.

Value

COMPARTMENTS returns a character vector of the epidemiological compartment names.

All other constants return integer values.

Details

DAEDALUS has 7 epidemiological compartments: susceptible, exposed, infectious and symptomatic ("infect_symp"), infectious and asymptomatic ("infect_asymp") , hospitalised, recovered, and dead.

There are 3 additional compartments that track the number of new infections, new hospitalisations, and new deaths (i_dE, i_dH, and i_dD).