Package index • vrcmort

Model fitting

vrc_fit(): Fit the VR reporting model
vrcm(): Fit a VR mortality + reporting model
vrc_standata(): Build Stan data for the VR reporting model
vrc_model(): Load and cache a Stan model
vrc_mortality(): Mortality model component specification
vrc_reporting(): Reporting model component specification
vrc_priors(): Prior specification constructors

Data preparation

vrc_validate_data(): Validate a VR long-format dataset
vrc_index(): Index a VR long-format dataset
vrc_diagnose_reporting(): Diagnose VR reporting artefacts
vrc_canonical_columns(): Canonical VR long format

Simulation

vrc_simulate(): Simulate VR mortality with conflict-driven reporting collapse
vrc_sim_truth(): Extract cell-level truth from a simulated dataset

Posterior extraction

posterior_reporting(): Posterior summaries for reporting completeness
posterior_mortality(): Posterior summaries for latent mortality rates
posterior_expected_counts(): Posterior summaries for expected observed counts
posterior_predict(): Posterior predictive distribution for observed counts
vrc_prior_summary(): Summarise priors used by a fitted model
vrc_coef_summary(): Summarise covariate effects
vrc_conflict_effects(): Region-specific conflict effects

Building new models

exponential(): Exponential prior
normal(): Normal prior
vrc_model_names(): List Stan models shipped with the package
vrc_model_spec(): Define a model specification
vrc_write_stan_template(): Write a custom Stan template to a directory

Plots

plot_reporting(): Plot estimated reporting completeness over time
plot_mortality(): Plot estimated mortality over time