Get summary data from DAEDALUS scenarios

Usage

get_summary_data(dt, disease_tags, format = c("long", "wide"), ...)

Arguments

dt: A <data.table> resulting from run_scenarios().
disease_tags: A character vector giving names for replicates within each scenario.
format: A string for whether the data should be returned in "long" or "wide" format. Returning a 'wide' data.frame is only recommended when there is a small number of disease_tags, typically a triplet of "low", "medium", and "high" risk scenarios.
...: Additional arguments passed to daedalus::get_epidemic_summary(). If passing groups, only format = "long" is supported.

Value

A <data.frame> summarising epidemiological outcomes: cumulative infections, deaths, and hospitalisations over the timeframe of the modelled epidemics.